[BBF Standards] To expand Reshma's comment / contamination and enforcement [Re: data exchange issue 1: Abstraction]
Ralph Santos
rasantos at lbl.gov
Tue Feb 26 13:47:22 EST 2008
Reshma mentions a point in passing that's worth emphasizing, that right
now even if there are other rules which are supposed to be in effect, as
a defacto matter right now basically anything with a part number is
called a part. The fact that these parts exist at all in the registry
undermines your assertion that there are rules of part definition,
because even if you were to state them so that everyone can see them,
there's no actual enforcement of the rule.
Let me make it clear my intent is not to diminish what the parts
registry has done to this point. Without the registry we'd have nothing
to talk about. However, for a standard to be successful it's more than
sitting down some rules, it's defining rules both to support the
activities of a community and supporting the realization of those rules
with tools and practices that help people to comply with those rules.
That means communicating those rules, making sure they comply with those
aspects of existing practice you want to support and expand, and
sometimes it might mean discouraging or culling things which undermine
those rules.
Again, if you can post somewhere on the wiki what rules parts are
currently supposed to observe for the benefit of the discussion and send
me a link, I'd appreciate it.
Thanks,
---ralf
Randy Rettberg wrote:
>
> There are also errors in the Registry. Parts are defined to NOT have
> biobrick ends on their sequence.
> If they do it is an error. Also, full plasmids consisting of a
> plasmid backbone and a part are also errors.
> Composite parts that are entered as basic parts are also errors, but
> necessary until we support a wider
> variety of scars.
>
> Randy Rettberg
>
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